{"id":27,"date":"2019-07-10T14:32:51","date_gmt":"2019-07-10T14:32:51","guid":{"rendered":"https:\/\/dworkowa.imdik.pan.pl\/new\/?page_id=27"},"modified":"2025-07-24T15:03:03","modified_gmt":"2025-07-24T13:03:03","slug":"publications","status":"publish","type":"page","link":"https:\/\/bioinfo.imdik.pan.pl\/index.php\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":" \t\r\n\r\n\r\n\r\n\r\n
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  1. Anna Bielenica, Piotr Roszkowski, Gabriela Anna Hryciuk, Joanna Stefa\u0144ska, Kinga Markowska, Anna Majewska, Micha Koli\u0144ski, Sebastian Kmiecik, Alicja Chrzanowska, Marta Struga, Antimicrobial profile of new pyrazole-based alkanoyl and oxoalkyl analogues of ciprofloxacin. Biomedicine & Pharmacotherapy 2025. 188: p. 118223.<\/li>\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n
  2. Pu\u0142awski, W., A. Koli\u0144ski, and M. Koli\u0144ski, Multiscale modeling of protofilament structures: A case study on insulin amyloid aggregates. International Journal of Biological Macromolecules, 2025. 285: p. 138382.<\/li>\r\n\r\n\r\n\r\n
  3. Szewczyk, D., T. Sadura-Sieklucka, B. Tarnacka, and B. Soko\u0142owska, Is there a connection between spine alignment, chest mobility, shoulder joint and respiratory parameters of patients with ankylosing spondylitis? Rheumatology International, 2024. 44(8): p. 1481-1486.<\/li>\r\n\r\n\r\n\r\n
  4. Soko\u0142owska, B., W. \u015awiderski, E. Smolis-B\u0105k, E. Soko\u0142owska, and T. Sadura-Sieklucka, A machine learning approach to evaluate the impact of virtual balance\/cognitive training on fall risk in older women. Frontiers in computational neuroscience, 2024. 18: p. 1390208.<\/li>\r\n\r\n\r\n\r\n
  5. Soko\u0142owska, B., Being in Virtual Reality and Its Influence on Brain Health\u2014An Overview of Benefits, Limitations and Prospects. Brain Sciences, 2024. 14(1): p. 72.<\/li>\r\n\r\n\r\n\r\n
  6. Roszkowski, P., A. Bielenica, J. Stefanska, A. Majewska, K. Markowska, H. Pituch, M. Kolinski, S. Kmiecik, A. Chrzanowska, and M. Struga, Antibacterial and anti-biofilm activities of new fluoroquinolone derivatives coupled with nitrogen-based heterocycles. Biomed Pharmacother, 2024. 179: p. 117439.<\/li>\r\n\r\n\r\n\r\n
  7. Pu\u0142awski, W., R. Dec, and W. Dzwolak, Clues to the Design of Aggregation-Resistant Insulin from Proline Scanning of Highly Amyloidogenic Peptides Derived from the N-Terminal Segment of the A-Chain. Molecular Pharmaceutics, 2024. 21(4): p. 2025-2033.<\/li>\r\n\r\n\r\n\r\n
  8. Olszy\u0144ski, K.H., R. Polowy, A.D. Wardak, I.A. \u0141aska, A.W. Grymanowska, W. Pu\u0142awski, O. Gawry\u015b, M. Koli\u0144ski, and R.K. Filipkowski, Male rats emit aversive 44-kHz ultrasonic vocalizations during prolonged Pavlovian fear conditioning. eLife, 2024. 12: p. RP88810.<\/li>\r\n\r\n\r\n\r\n
  9. Dylewska, M., I. Dabrowska, K. Cwiek, K. Padol, D. Mielecki, B. Sokolowska, J. Poznanski, and A.M. Maciejewska, AlkA Glycosylase and AlkB Dioxygenase Constitute an Effective Protective System for Endogenously Arising Acrolein: E. coli AlkA Glycosylase Excises Acrolein Adduct to Adenine. J Mol Biol, 2024. 437(2): p. 168912.<\/li>\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n
  10. Szulczyk D, Wozi\u0144ski M, Koli\u0144ski M, Kmiecik S, G\u0142ogowska A, Augustynowicz-Kope\u0107 E, A Dobrowolski M, Roszkowski P, Struga M and Ciura K: Menthol- and thymol-based ciprofloxacin derivatives against Mycobacterium tuberculosis: in vitro activity, lipophilicity, and computational studies. Scientific Reports, 2023, 16328(13).\r\n\r\n\r\n
  11. Pulawski W, Kolinski A, Kolinski M: Integrative modeling of diverse protein-peptide systems using CABS-dock. PLOS Computational Biology, 2023, 19(7): e1011275.<\/li>\r\n\r\n\r\n\r\n
  12. Struga M, Roszkowski P, Bielenica A, Otto-\u015alusarczyk D, St\u0119pie\u0144 K, Stefa\u0144ska J, Zabost A, Augustynowicz-Kope\u0107 E, Koli\u0144ski M, Kmiecik S, Myslovska A, and Wrzosek M: N-Acylated Ciprofloxacin Derivatives: Synthesis and In Vitro Biological Evaluation as Antibacterial and Anticancer Agents. ACS Omega, 2023.<\/li>\r\n\r\n\r\n\r\n
  13. Maciag M, Plazinski W, Pulawski W, Kolinski M, Jozwiak K, Plazinska A: A comprehensive pharmacological analysis of fenoterol and its derivatives to unravel the role of \u03b22-adrenergic receptor in zebrafish. Biomedicine & Pharmacotherapy. 2023, 60, 114355.<\/li>\r\n\r\n\r\n\r\n
  14. Szostek T, Szulczyk D, Szyma\u0144ska-Majchrzak J, Koli\u0144ski M, Kmiecik S, Otto-\u015alusarczyk D, Zawodnik A, Rajkowska E, Chaniewicz K, Struga M and Roszkowski P: Design and Synthesis of Menthol and Thymol Derived Ciprofloxacin: Influence of Structural Modifications on the Antibacterial Activity and Anticancer Propertiese. International Journal of Molecular Sciences, 2022, 23(12), 6600.<\/li>\r\n\r\n\r\n\r\n
  15. Pu\u0142awski, W. and W. Dzwolak, Virtual quasi-2D intermediates as building blocks for plausible structural models of amyloid fibrils from proteins with complex topologies: A case study of insulin. Langmuir, 2022.<\/li>\r\n\r\n\r\n\r\n
  16. Dec, R., R. Okon, W. Pulawski, M. Waclawska, and W. Dzwolak, Forced amyloidogenic cooperativity of structurally incompatible peptide segments: Fibrillization behavior of highly aggregation-prone A-chain fragment of insulin coupled to all-L, and alternating L\/D octaglutamates. Int J Biol Macromol, 2022. 223(Pt A): p. 362-369.<\/li>\r\n\r\n\r\n\r\n
  17. Chrzanowska A, Struga M, Roszkowski P, Koli\u0144ski M, Kmiecik S,Ja\u0142brzykowska K, Zabost A, Stefa\u0144ska J, Augustynowicz-Kope\u0107 E,Wrzosek M and Bielenica A: The Effect of Conjugation of Ciprofloxacin and Moxifloxacin with Fatty Acids on Their Antibacterial and Anticancer Activity. International Journal of Molecular Sciences. 2022, 23(11), 6261.<\/li>\r\n\r\n\r\n\r\n
  18. Roszkowski P, Szyma\u0144ska-Majchrzak J, Koli\u0144ski M, Kmiecik S, Wrzosek M, Struga M and Szulczyk D: Novel Tetrazole-Based Antimicrobial Agents Targeting Clinical Bacteria Strains: Exploring the Inhibition of Staphylococcus aureus DNA Topoisomerase IV and Gyrase. International Journal of Molecular Sciences, 2022. 23(1): p. 378.<\/li>\r\n\r\n\r\n\r\n
  19. Zalewski M, Kmiecik S, Kolinski M: Molecular Dynamics Scoring of Protein\u2013Peptide Models Derived from Coarse-Grained Docking. Molecules 2021, 26(11), 3293.<\/li>\r\n\r\n\r\n\r\n
  20. Koli\u0144ski M, Dec R, Dzwolak W: Multiscale Modeling of Amyloid Fibrils Formed by Aggregating Peptides Derived from the Amyloidogenic Fragment of the A-Chain of Insulin. Int. J. Mol. Sci. 2021, 22(22), 12325.<\/li>\r\n\r\n\r\n\r\n
  21. Zalewski M, Kmiecik S, Kolinski M: Molecular Dynamics Scoring of Protein\u2013Peptide Models Derived from Coarse-Grained Docking. Molecules 2021, 26(11), 3293.<\/li>\r\n\r\n\r\n\r\n
  22. Badaczewska-Dawid A, Kmiecik S, Kolinski M, Docking of peptides to GPCRs using a combination of CABS-dock with FlexPepDock refinement. Briefings in Bioinformatics 2020, May 20;22(3):bbaa109.<\/li>\r\n\r\n\r\n\r\n
  23. Dec R, Kolinski M, Kouza M, Dzwolak W, Rapid self-association of highly amyloidogenic H-fragments of insulin: Experiment and molecular dynamics simulations. International Journal of Biological Macromolecules 2020, May 1;150:894-903.<\/li>\r\n\r\n\r\n\r\n
  24. Koli\u0144ski, M., S. Kmiecik, R. Dec, M. Piejko, P. Mak, and W. Dzwolak, Docking interactions determine early cleavage events in insulin proteolysis by pepsin: Experiment and simulation. International Journal of Biological Macromolecules, 2020, 2020, Apr 15;149:1151-1160.<\/li>\r\n\r\n\r\n\r\n
  25. Kurcinski, M., A. Badaczewska\u2010Dawid, M. Kolinski, A. Kolinski, and S. Kmiecik, Flexible docking of peptides to proteins using CABS\u2010dock. Protein Science, 2020. 29(1): p. 211-222.<\/li>\r\n\r\n\r\n\r\n
  26. Dec, R., M. Koli\u0144ski, and W. Dzwolak, Beyond amino acid sequence: disulfide bonds and the origins of the extreme amyloidogenic properties of insulin’s H\u2010fragment. The FEBS journal, 2019. 286(16): p. 3194-3205.<\/li>\r\n\r\n\r\n\r\n
  27. Kmiecik, S., J. Wabik, M. Kolinski, M. Kouza, and A. Kolinski, Protein Dynamics Simulations Using Coarse-Grained Models, in Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes. 2019, Springer, Cham. p. 61-87.<\/li>\r\n\r\n\r\n\r\n
  28. Blaszczyk, M., D. Gront, S. Kmiecik, M. Kurcinski, M. Kolinski, M.P. Ciemny, K. Ziolkowska, M. Panek, and A. Kolinski, Protein Structure Prediction Using Coarse-Grained Models, in Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes. 2019, Springer, Cham. p. 27-59.<\/li>\r\n\r\n\r\n\r\n
  29. Szulczyk, D., M.A. Dobrowolski, P. Roszkowski, A. Bielenica, J. Stefa\u0144ska, M. Koli\u0144ski, S. Kmiecik, M. J\u00f3\u017awiak, M. Wrzosek, and W. Olejarz, Design and synthesis of novel 1H-tetrazol-5-amine based potent antimicrobial agents: DNA topoisomerase IV and gyrase affinity evaluation supported by molecular docking studies. European journal of medicinal chemistry, 2018. 156: p. 631-640.<\/li>\r\n\r\n\r\n\r\n
  30. Soko\u0142owska, B., T. Sadura-Sieklucka, L. Czerwosz, M. Hallay-Suszek, B. Lesyng, and K. Ksi\u0119\u017copolska-Or\u0142owska, Estimation of Posturographic Trajectory Using k-Nearest Neighbors Classifier in Patients with Rheumatoid Arthritis and Osteoarthritis. Progress in Medical Research, 2018: p. 85-95.<\/li>\r\n\r\n\r\n\r\n
  31. Sadura-Sieklucka, T., B. Soko\u0142owska, A. Prusinowska, A. Trzaska, and K. Ksi\u0119\u017copolska-Or\u0142owska, Benefits of wrist splinting in patients with rheumatoid arthritis. Reumatologia, 2018. 56(6): p. 362.<\/li>\r\n\r\n\r\n\r\n
  32. Klemba, A., J.K. Purzycka-Olewiecka, G. Wcis\u0142o, A.M. Czarnecka, S. Lewicki, B. Lesyng, C. Szczylik, and C. Kieda, Surface markers of cancer stem-like cells of ovarian cancer and their clinical relevance. Contemporary Oncology, 2018. 22(1A): p. 48.<\/li>\r\n\r\n\r\n\r\n
  33. Daniluk, P., G. Firlik, and B. Lesyng, Implementation of a maximum clique search procedure on CUDA. Journal of Heuristics, 2018: p. 1-25.<\/li>\r\n\r\n\r\n\r\n
  34. Bielenica, A., A. Drzewiecka-Antonik, P. Rejmak, J. Stefa\u0144ska, M. Koli\u0144ski, S. Kmiecik, B. Lesyng, M. W\u0142odarczyk, P. Pietrzyk, and M. Struga, Synthesis, structural and antimicrobial studies of type II topoisomerase-targeted copper (II) complexes of 1, 3-disubstituted thiourea ligands. Journal of inorganic biochemistry, 2018. 182: p. 61-70.<\/li>\r\n\r\n\r\n\r\n
  35. Niebroj-Dobosz, I., B. Soko\u0142owska, A. Madej-Pilarczyk, M. Marchel, and I. Hausmanowa-Petrusewicz, Dysfunctional lamins as mediators of oxidative stress in Emery-Dreifuss muscular dystrophy. Folia neuropathologica, 2017. 55(3): p. 193-198.<\/li>\r\n\r\n\r\n\r\n
  36. Gogolewski, K., W. Wronowska, A. Lech, B. Lesyng, and A. Gambin, Inferring molecular processes heterogeneity from transcriptional data. BioMed research international, 2017. 2017.<\/li>\r\n\r\n\r\n\r\n
  37. Czerwosz, L., E. Szczepek, K. Nowi\u0144ski, B. Soko\u0142owska, J. Jurkiewicz, Z. Czernicki, and W. Koszewski, Discriminant analysis of intracranial volumetric variables in patients with normal pressure hydrocephalus and brain atrophy, in Current Concepts in Medical Research and Practice. 2017, Springer. p. 83-94.<\/li>\r\n\r\n\r\n\r\n
  38. Tro\u0107, A., M. Zimnicka, M. Koli\u0144ski, and W. Danikiewicz, Structural Elucidation of \u03b2\u2010Lactam Diastereoisomers through Ion Mobility Mass Spectrometry Studies and Theoretical Calculations. Journal of Mass Spectrometry, 2016. 51(4): p. 282-290.<\/li>\r\n\r\n\r\n\r\n
  39. Pulawski, W., M. Jamroz, M. Kolinski, A. Kolinski, and S. Kmiecik, Coarse-grained simulations of membrane insertion and folding of small helical proteins using the CABS model. Journal of chemical information and modeling, 2016. 56(11): p. 2207-2215.<\/li>\r\n\r\n\r\n\r\n
  40. Mielecki, M. and B. Lesyng, Cinnamic acid derivatives as inhibitors of oncogenic protein kinases\u2013structure, mechanisms and biomedical effects. Current medicinal chemistry, 2016. 23(10): p. 954-982.<\/li>\r\n\r\n\r\n\r\n
  41. Ksi\u0119\u017copolska-Or\u0142owska, K., T. Sadura-Sieklucka, K. Kasprzak, E. Gaszewska, A. Rodkiewicz-Bogus\u0142awska, and B. Soko\u0142owska, The beneficial effects of rehabilitation on hand function in patients with rheumatoid arthritis. Reumatologia, 2016. 54(6): p. 285.<\/li>\r\n\r\n\r\n\r\n
  42. Kowalczyk, P., J. Jaworek, M. Kot, B. Sokolowska, A. Bielen, B. Janowska, J. Ciesla, G. Szparecki, B. Sados, and B. Tudek, Inflammation increases oxidative DNA Damage repair and stimulates preneoplastic changes in colons of newborn rats. Journal of Physiology and Pharmacology, 2016. 67(2): p. 277-286.<\/li>\r\n\r\n\r\n\r\n
  43. Kmiecik, S., D. Gront, M. Kolinski, L. Wieteska, A.E. Dawid, and A. Kolinski, Coarse-grained protein models and their applications. Chemical Reviews, 2016. 116(14): p. 7898-7936.<\/li>\r\n\r\n\r\n\r\n
  44. Dziubi\u0144ski, M. and B. Lesyng, Toward the identification of molecular cogs. Journal of computational chemistry, 2016. 37(9): p. 848-860.<\/li>\r\n\r\n\r\n\r\n
  45. Bielenica, A., E. K\u0119dzierska, M. Koli\u0144ski, S. Kmiecik, A. Koli\u0144ski, F. Fiorino, B. Severino, E. Magli, A. Corvino, and I. Rossi, 5-HT2 receptor affinity, docking studies and pharmacological evaluation of a series of 1, 3-disubstituted thiourea derivatives. European journal of medicinal chemistry, 2016. 116: p. 173-186.<\/li>\r\n\r\n\r\n\r\n
  46. Yuan, S., K. Palczewski, Q. Peng, M. Kolinski, H. Vogel, and S. Filipek, The Mechanism of Ligand\u2010Induced Activation or Inhibition of \u03bc\u2010and \u03ba\u2010Opioid Receptors. Angewandte Chemie International Edition, 2015. 54(26): p. 7560-7563.<\/li>\r\n\r\n\r\n\r\n
  47. Wronowska, W., A. Charzy\u0144ska, K. Niena\u0142towski, and A. Gambin, Computational modeling of sphingolipid metabolism. BMC systems biology, 2015. 9(1): p. 47.<\/li>\r\n\r\n\r\n\r\n
  48. Wilczynski, P.D. and B. Lesyng, WeBIAS: a web server for publishing bioinformatics applications. BMC Research Notes, 2015. 8.<\/li>\r\n\r\n\r\n\r\n
  49. Stawujak, K., M. Startek, A. Gambin, and D. Grzebelus, MuTAnT: a family of Mutator-like transposable elements targeting TA microsatellites in Medicago truncatula. Genetica, 2015. 143(4): p. 433-440.<\/li>\r\n\r\n\r\n\r\n
  50. Startek, M., P. Szafranski, T. Gambin, I.M. Campbell, P. Hixson, C.A. Shaw, P. Stankiewicz, and A. Gambin, Genome-wide analyses of LINE\u2013LINE-mediated nonallelic homologous recombination. Nucleic acids research, 2015. 43(4): p. 2188-2198.<\/li>\r\n\r\n\r\n\r\n
  51. Sobieraj, M., K. Krzy\u015bko, A. Jarmu\u0142a, M. Kalinowski, B. Lesyng, M. Prokopowicz, J. Cie\u015bla, A. Gojd\u017a, and B. Kierdaszuk, A QM-MD simulation approach to the analysis of FRET processes in (bio) molecular systems. A case study: complexes of E. coli purine nucleoside phosphorylase and its mutants with formycin A. Journal of molecular modeling, 2015. 21(4): p. 75.<\/li>\r\n\r\n\r\n\r\n
  52. Sinkiewicz-Darol, E., A.F. Lacerda, A. Kostera-Pruszczyk, A. Potulska-Chromik, B. Soko\u0142owska, D. Kabzi\u0144ska, C.R. Brunetti, I. Hausmanowa-Petrusewicz, and A. Kocha\u0144ski, The LITAF\/SIMPLE I92V sequence variant results in an earlier age of onset of CMT1A\/HNPP diseases. neurogenetics, 2015. 16(1): p. 27-32.<\/li>\r\n\r\n\r\n\r\n
  53. Niebroj-Dobosz, I.M., B. Soko\u0142owska, A. Madej-Pilarczyk, M. Marchel, and I. Hausmanowa-Petrusewicz, Tissue inhibitors of matrix metalloproteinases in serum are cardiac biomarkers in Emery-Dreifuss muscular dystrophy. Kardiologia Polska (Polish Heart Journal), 2015. 73(5): p. 360-365.<\/li>\r\n\r\n\r\n\r\n
  54. Horwacik, I., P. Golik, P. Grudnik, M. Kolinski, M. Zdzalik, H. Rokita, and G. Dubin, Structural basis of GD2 ganglioside and mimetic peptide recognition by 14G2a antibody. Molecular & Cellular Proteomics, 2015. 14(10): p. 2577-2590.<\/li>\r\n\r\n\r\n\r\n
  55. Dziubi\u0144ski, M., P. Daniluk, and B. Lesyng, ResiCon: a method for the identification of dynamic domains, hinges and interfacial regions in proteins. Bioinformatics, 2015. 32(1): p. 25-34.<\/li>\r\n\r\n\r\n\r\n
  56. Zimnicka, M., A. Troc\u0301, M. Ceborska, M. Jakubczak, M. Kolin\u0301ski, and W. Danikiewicz, Structural elucidation of specific noncovalent association of folic acid with native cyclodextrins using an ion mobility mass spectrometry and theoretical approach. Analytical chemistry, 2014. 86(9): p. 4249-4255.<\/li>\r\n\r\n\r\n\r\n
  57. Soko\u0142owska, B., A. J\u00f3\u017awik, I. Niebroj-Dobosz, and I. Hausmanowa-Petrusewicz, A pattern recognition approach to Emery-Dreifuss muscular dystrophy (EDMD) study. Journal of Medical Informatics & Technologies, 2014. 23: p. 165–172.<\/li>\r\n\r\n\r\n\r\n
  58. Soko\u0142owska, B., L. Czerwosz, M. Hallay-Suszek, T. Sadura-Sieklucka, and K. Ksi\u0119\u017copolska-Or\u0142owska, Posturography in patients with rheumatoid arthritis and osteoarthritis, in Lung Cancer and Autoimmune Disorders. 2014, Springer. p. 63-70.<\/li>\r\n\r\n\r\n\r\n
  59. Sen, P., A.V. Dharmadhikari, T. Majewski, M.A. Mohammad, T.V. Kalin, J. Zabielska, X. Ren, M. Bray, H.M. Brown, and S. Welty, Comparative analyses of lung transcriptomes in patients with alveolar capillary dysplasia with misalignment of pulmonary veins and in foxf1 heterozygous knockout mice. PLoS One, 2014. 9(4): p. e94390.<\/li>\r\n\r\n\r\n\r\n
  60. Niebroj-Dobosz, I., B. Soko\u0142owska, A. Madej-Pilarczyk, M. Marchel, and I. Hausmanowa-Petrusewicz, Cardiovascular risk markers in dilated cardiomyopathy in Emery\u2013Dreifuss muscular dystrophy (EDMD). International journal of cardiology, 2014. 173(2): p. 324-325.<\/li>\r\n\r\n\r\n\r\n
  61. Mielecki, M., M. Milner-Krawczyk, K. Grzelak, D. Mielecki, K. A Krzysko, B. Lesyng, and W. Priebe, Analogs of cinnamic acid benzyl amide as nonclassical inhibitors of activated JAK2 kinase. Current cancer drug targets, 2014. 14(7): p. 638-651.<\/li>\r\n\r\n\r\n\r\n
  62. Lazarova, T., K. Mlynarczyk, S. Filipek, M. Kolinski, T.A. Wassenaar, E. Querol, V. Renugopalakrishnan, S. Viswanathan, and E. Padr\u00f3s, The effect of triple glutamic mutations E9Q\/E194Q\/E204Q on the structural stability of bacteriorhodopsin. The FEBS journal, 2014. 281(4): p. 1181-1195.<\/li>\r\n\r\n\r\n\r\n
  63. Kmiecik, S., J. Wabik, M. Kolinski, M. Kouza, and A. Kolinski, Coarse-grained modeling of protein dynamics, in Computational methods to study the structure and dynamics of biomolecules and biomolecular processes. 2014, Springer, Berlin, Heidelberg. p. 55-79.<\/li>\r\n\r\n\r\n\r\n
  64. Kmiecik, S., M. Jamroz, and M. Kolinski, Structure Prediction of the Second Extracellular Loop in G-Protein-Coupled Receptors. Biophysical journal, 2014: p. 2408\u20132416.<\/li>\r\n\r\n\r\n\r\n
  65. Dharmadhikari, A.V., T. Gambin, P. Szafranski, W. Cao, F.J. Probst, W. Jin, P. Fang, K. Gogolewski, A. Gambin, and J.K. George-Abraham, Molecular and clinical analyses of 16q24. 1 duplications involving FOXF1 identify an evolutionarily unstable large minisatellite. BMC medical genetics, 2014. 15(1): p. 128.<\/li>\r\n\r\n\r\n\r\n
  66. Daniluk, P. and B. Lesyng, Theoretical and computational aspects of protein structural alignment, in Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes. 2014, Springer. p. 557-598.<\/li>\r\n\r\n\r\n\r\n
  67. Bartnik, M., B. Nowakowska, K. Derwi\u0144ska, B. Wi\u015bniowiecka-Kowalnik, M. K\u0119dzior, J. Bernaciak, K. Ziemkiewicz, T. Gambin, M. Sykulski, and N. Bezniakow, Application of array comparative genomic hybridization in 256 patients with developmental delay or intellectual disability. Journal of applied genetics, 2014. 55(1): p. 125-144.<\/li>\r\n\r\n\r\n\r\n
  68. Wi\u015bniowiecka-Kowalnik, B., M. Kastory-Bronowska, M. Bartnik, K. Derwi\u0144ska, W. Dymczak-Domini, D. Szumbarska, E. Ziemka, K. Szcza\u0142uba, M. Sykulski, and T. Gambin, Application of custom-designed oligonucleotide array CGH in 145 patients with autistic spectrum disorders. European Journal of Human Genetics, 2013. 21(6): p. 620.<\/li>\r\n\r\n\r\n\r\n
  69. Startek, M., A. Le Rouzic, P. Capy, D. Grzebelus, and A. Gambin, Genomic parasites or symbionts? Modeling the effects of environmental pressure on transposition activity in asexual populations. Theoretical population biology, 2013. 90: p. 145-151.<\/li>\r\n\r\n\r\n\r\n
  70. Smyk, M., P. Szafranski, M. Startek, A. Gambin, and P. Stankiewicz, Chromosome conformation capture-on-chip analysis of long-range cis-interactions of the SOX9 promoter. Chromosome research, 2013. 21(8): p. 781-788.<\/li>\r\n\r\n\r\n\r\n
  71. Rybi\u0144ski, M., Z. Szyma\u0144ska, S. Lasota, and A. Gambin, Modelling the efficacy of hyperthermia treatment. Journal of The Royal Society Interface, 2013. 10(88): p. 20130527.<\/li>\r\n\r\n\r\n\r\n
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Mutation Research\/Fundamental and Molecular Mechanisms of Mutagenesis, 2010. 684(1-2): p. 24-34.<\/li>\r\n<\/ol>\r\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-27","page","type-page","status-publish","hentry"],"yoast_head":"\nPublications |<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/bioinfo.imdik.pan.pl\/index.php\/publications\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Publications |\" \/>\n<meta property=\"og:url\" content=\"https:\/\/bioinfo.imdik.pan.pl\/index.php\/publications\/\" \/>\n<meta property=\"og:site_name\" content=\"Bioinformatics Laboratory\" \/>\n<meta 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