{"id":145,"date":"2019-07-14T21:43:37","date_gmt":"2019-07-14T21:43:37","guid":{"rendered":"https:\/\/dworkowa.imdik.pan.pl\/new\/?page_id=145"},"modified":"2025-07-24T15:12:02","modified_gmt":"2025-07-24T13:12:02","slug":"michal-kolinski","status":"publish","type":"page","link":"https:\/\/bioinfo.imdik.pan.pl\/index.php\/michal-kolinski\/","title":{"rendered":"Micha\u0142 Koli\u0144ski, PhD DSc"},"content":{"rendered":"<div class=\"wp-block-image\">\r\n<figure class=\"alignright is-resized\"><img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/dworkowa.imdik.pan.pl\/new\/wp-content\/uploads\/2019\/07\/michal_kolinski-1-979x1024.png\" alt=\"\" class=\"wp-image-147\" width=\"179\" height=\"186\" srcset=\"https:\/\/bioinfo.imdik.pan.pl\/wp-content\/uploads\/2019\/07\/michal_kolinski-1-979x1024.png 979w, https:\/\/bioinfo.imdik.pan.pl\/wp-content\/uploads\/2019\/07\/michal_kolinski-1-287x300.png 287w, https:\/\/bioinfo.imdik.pan.pl\/wp-content\/uploads\/2019\/07\/michal_kolinski-1-768x803.png 768w, https:\/\/bioinfo.imdik.pan.pl\/wp-content\/uploads\/2019\/07\/michal_kolinski-1.png 984w\" sizes=\"auto, (max-width: 179px) 100vw, 179px\" \/><\/figure>\r\n<\/div>\r\n\r\n\r\n<p>  e-mail address: mkolinski@imdik.pan.pl<br>  Phone#: (+48) 22 849 93 58<br>  Bioinformatics Laboratory,<br>  Mossakowski Medical Research Institute<br>  Polish Academy of Sciences<br>  5 Pawi\u0144skiego Str.<br>  02-106 Warsaw, <br>  Poland                                                                                     <\/p>\r\n\r\n\r\n<hr>\r\n<p style=\"text-align: left;\"><strong>EDUCATION:&nbsp;<\/strong><\/p>\r\n<ul>\r\n<li>2024: DSc (Habilitation), &#8220;Development of multi-scale molecular modeling methods and their application to study complex protein systems&#8221;, Institute of Biochemistry and Biophysics Polish Academy of Sciences, Poland<\/li>\r\n<li>2010: PhD, \u201cModeling of structures of GPCRs and mechanisms of their activation in case of opioid receptors\u201d, Institute of Biochemistry and Biophysics Polish Academy of Sciences, Poland<\/li>\r\n<li>2004: MSc, University of Warsaw, Poland<\/li>\r\n<\/ul>\r\n<p><strong>PROFESSIONAL EXPERIENCE:<\/strong><\/p>\r\n<ul>\r\n<li>2019-present: Head of Bioinformatics Laboratory, Mossakowski Medical Research Institute Polish Academy of Sciences, Warsaw, Poland<\/li>\r\n<li>2017-2018: Assistant Professor,&nbsp; Faculty of Chemistry, Biological and Chemical Research Centre, University of Warsaw, Warsaw, Poland<\/li>\r\n<li>2015-2019: Assistant Professor, Bioinformatics Laboratory, Mossakowski Medical Research Institute, Polish Academy of Sciences, Warsaw, Poland<\/li>\r\n<li>2012-2015: Senior Specialist, Bioinformatics Laboratory, Mossakowski Medical Research Centre Polish Academy of Sciences, Warsaw, Poland<\/li>\r\n<li>2010-2011: Postdoctoral researcher, Laboratory of Medicinal Chemistry and Neuroengineering, Medical University of Lublin, Lublin, Poland<\/li>\r\n<li>2003-2009: Research Assistant, Laboratory of Biomodelling, International Institute of Molecular and Cell Biology, Warsaw, Poland<\/li>\r\n<\/ul>\r\n<p><strong>ORCID: <a href=\"https:\/\/orcid.org\/0000-0003-1047-2186\">0000-0003-1047-2186<\/a><\/strong><\/p>\r\n<p><strong>PUBLICATION\/CITATION STATISTICS: <\/strong><a href=\"https:\/\/scholar.google.pl\/citations?user=QyDVlYMAAAAJ&amp;hl=pl\">according to google scholar<\/a><\/p>\r\n<hr>\r\n<p><strong>PUBLICATIONS:<\/strong><\/p>\r\n\r\n\r\n<p><style>\r\n<!--\r\n \/* Font Definitions *\/\r\n @font-face\r\n\t{font-family:\"Cambria Math\";\r\n\tpanose-1:2 4 5 3 5 4 6 3 2 4;}\r\n@font-face\r\n\t{font-family:Calibri;\r\n\tpanose-1:2 15 5 2 2 2 4 3 2 4;}\r\n \/* Style Definitions *\/\r\n p.MsoNormal, li.MsoNormal, div.MsoNormal\r\n\t{margin-top:0cm;\r\n\tmargin-right:0cm;\r\n\tmargin-bottom:10.0pt;\r\n\tmargin-left:0cm;\r\n\tline-height:115%;\r\n\tfont-size:11.0pt;\r\n\tfont-family:\"Calibri\",\"sans-serif\";}\r\np.MsoListParagraph, li.MsoListParagraph, div.MsoListParagraph\r\n\t{margin-top:0cm;\r\n\tmargin-right:0cm;\r\n\tmargin-bottom:10.0pt;\r\n\tmargin-left:36.0pt;\r\n\tline-height:115%;\r\n\tfont-size:11.0pt;\r\n\tfont-family:\"Calibri\",\"sans-serif\";}\r\np.MsoListParagraphCxSpFirst, li.MsoListParagraphCxSpFirst, div.MsoListParagraphCxSpFirst\r\n\t{margin-top:0cm;\r\n\tmargin-right:0cm;\r\n\tmargin-bottom:0cm;\r\n\tmargin-left:36.0pt;\r\n\tmargin-bottom:.0001pt;\r\n\tline-height:115%;\r\n\tfont-size:11.0pt;\r\n\tfont-family:\"Calibri\",\"sans-serif\";}\r\np.MsoListParagraphCxSpMiddle, li.MsoListParagraphCxSpMiddle, div.MsoListParagraphCxSpMiddle\r\n\t{margin-top:0cm;\r\n\tmargin-right:0cm;\r\n\tmargin-bottom:0cm;\r\n\tmargin-left:36.0pt;\r\n\tmargin-bottom:.0001pt;\r\n\tline-height:115%;\r\n\tfont-size:11.0pt;\r\n\tfont-family:\"Calibri\",\"sans-serif\";}\r\np.MsoListParagraphCxSpLast, li.MsoListParagraphCxSpLast, div.MsoListParagraphCxSpLast\r\n\t{margin-top:0cm;\r\n\tmargin-right:0cm;\r\n\tmargin-bottom:10.0pt;\r\n\tmargin-left:36.0pt;\r\n\tline-height:115%;\r\n\tfont-size:11.0pt;\r\n\tfont-family:\"Calibri\",\"sans-serif\";}\r\n.MsoPapDefault\r\n\t{margin-bottom:10.0pt;\r\n\tline-height:115%;}\r\n@page WordSection1\r\n\t{size:595.3pt 841.9pt;\r\n\tmargin:70.85pt 70.85pt 70.85pt 70.85pt;}\r\ndiv.WordSection1\r\n\t{page:WordSection1;}\r\n \/* List Definitions *\/\r\n ol\r\n\t{margin-bottom:0cm;}\r\nul\r\n\t{margin-bottom:0cm;}\r\n-->\r\n<\/style><\/p>\r\n\r\n\r\n\r\n<div class=\"WordSection1\">\r\n<table class=\"MsoTableLightShading\" style=\"border-collapse: collapse; border: none;\" cellspacing=\"0\" cellpadding=\"0\" border=\"0\">\r\n\r\n\r\n\r\n<tbody>\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n<tr>\r\n<td style=\"background: silver; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">52<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"background: silver; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Bielenica A, Roszkowski P, Hryciuk GA, Stefa\u0144ska J, Markowska K, Majewska A, Koli\u0144ski A, Kmiecik S, Chrzanowska A, Struga M: <a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0753332225004172\">Antimicrobial profile of new pyrazole-based alkanoyl and oxoalkyl analogues of ciprofloxacin.<\/a> Biomedicine &#038; Pharmacotherapy, 2025, 188: p.118223.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n\r\n\r\n\r\n\r\n\r\n\r\n<tr>\r\n<td style=\"background: white; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">51<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"background: white; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Pulawski W, Kolinski A, Kolinski M: <a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0141813024091931\">Multiscale modeling of protofilament structures: A case study on insulin amyloid aggregates.<\/a> International Journal of Biological Macromolecules, 2025. 285: p. 138382.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n\r\n\r\n\r\n\r\n\r\n<tr>\r\n<td style=\"background: silver; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">50<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"background: silver; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Olszy\u0144ski KH, R Polowy, AD Wardak, IA \u0141aska, AW Grymanowska, W Pu\u0142awski, O Gawry\u015b, M Koli\u0144ski, and RK Filipkowski: <a href=\"https:\/\/elifesciences.org\/articles\/88810\">Male rats emit aversive 44-kHz ultrasonic vocalizations during prolonged Pavlovian fear conditioning.<\/a> eLife, 2024, 12: p.RP88810.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n\r\n\r\n\r\n<tr>\r\n<td style=\"background: white; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">49<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"background: white; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Roszkowski P, A Bielenica, J Stefanska, A Majewska, K Markowska, H Pituch, M Kolinski, S Kmiecik, A Chrzanowska, and M Struga: <a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0753332224013258\">Antibacterial and anti-biofilm activities of new fluoroquinolone derivatives coupled with nitrogen-based heterocycles.<\/a> Biomedicine &#038; Pharmacotherapy, 2024, 179: 117439.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n\r\n\r\n\r\n\r\n<tr>\r\n<td style=\"background: silver; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">48<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"background: silver; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Szulczyk D, Wozi\u0144ski M, Koli\u0144ski M, Kmiecik S, G\u0142ogowska A, Augustynowicz-Kope\u0107 E, A Dobrowolski M, Roszkowski P, Struga M and Ciura K: <a href=\"https:\/\/www.nature.com\/articles\/s41598-023-43708-4\">Menthol- and thymol-based ciprofloxacin derivatives against Mycobacterium tuberculosis: in vitro activity, lipophilicity, and computational studies.<\/a> Scientific Reports, 2023, 16328(13).<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n\r\n\r\n\r\n<tr>\r\n<td style=\"background: white; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">47<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"background: white; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Pulawski W, Kolinski A, Kolinski M: <a href=\"https:\/\/journals.plos.org\/ploscompbiol\/article?id=10.1371\/journal.pcbi.1011275\">Integrative modeling of diverse protein-peptide systems using CABS-dock.<\/a> PLOS Computational Biology, 2023, 19(7): e1011275.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n\r\n\r\n\r\n\r\n<tr>\r\n<td style=\"background: silver; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">46<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"background: silver; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Struga M, Roszkowski P, Bielenica A, Otto-\u015alusarczyk D, St\u0119pie\u0144 K, Stefa\u0144ska J, Zabost A, Augustynowicz-Kope\u0107 E, Koli\u0144ski M, Kmiecik S, Myslovska A, and Wrzosek M: <a href=\"https:\/\/pubs.acs.org\/doi\/10.1021\/acsomega.3c00554\">N-Acylated Ciprofloxacin Derivatives: Synthesis and In Vitro Biological Evaluation as Antibacterial and Anticancer Agents.<\/a> ACS Omega, 2023.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n\r\n\r\n\r\n\r\n<tr>\r\n<td style=\"background: white; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">45<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"background: white; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Maciag M, Plazinski W, Pulawski W, Kolinski M, Jozwiak K, Plazinska A: <a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0753332223001439?via%3Dihub\">A comprehensive pharmacological analysis of fenoterol and its derivatives to unravel the role of \u03b22-adrenergic receptor in zebrafish.<\/a> Biomedicine &#038; Pharmacotherapy. 2023, 60, 114355.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n\r\n\r\n\r\n\r\n\r\n\r\n<tr>\r\n<td style=\"background: silver; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">44<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"background: silver; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Szostek T, Szulczyk D, Szyma\u0144ska-Majchrzak J, Koli\u0144ski M, Kmiecik S, Otto-\u015alusarczyk D, Zawodnik A, Rajkowska E, Chaniewicz K, Struga M and Roszkowski P: <a href=\"https:\/\/www.mdpi.com\/1422-0067\/23\/12\/6600\"> Design and Synthesis of Menthol and Thymol Derived Ciprofloxacin: Influence of Structural Modifications on the Antibacterial Activity and Anticancer Propertiese.<\/a> International Journal of Molecular Sciences, 2022, 23(12), 6600. <\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n<tr>\r\n<td style=\"background: white; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">43<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"background: white; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Chrzanowska A, Struga M, Roszkowski P, Koli\u0144ski M, Kmiecik S, Ja\u0142brzykowska K, Zabost A, Stefa\u0144ska J, Augustynowicz-Kope\u0107 E, Wrzosek M and Bielenica A: <a href=\"https:\/\/www.mdpi.com\/1422-0067\/23\/11\/6261\">The Effect of Conjugation of Ciprofloxacin and Moxifloxacin with Fatty Acids on Their Antibacterial and Anticancer Activity.<\/a> International Journal of Molecular Sciences. 2022, 23(11), 6261.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n\r\n\r\n\r\n\r\n\r\n\r\n<tr>\r\n<td style=\"background: silver; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">42<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"background: silver; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Roszkowski P, Szyma\u0144ska-Majchrzak J, Koli\u0144ski M, Kmiecik S, Wrzosek M, Struga M and Szulczyk D:<a href=\"https:\/\/www.mdpi.com\/1422-0067\/23\/1\/378\"> Novel Tetrazole-Based Antimicrobial Agents Targeting Clinical Bacteria Strains: Exploring the Inhibition of Staphylococcus aureus DNA Topoisomerase IV and Gyrase.<\/a> International Journal of Molecular Sciences, 2022. 23(1): p. 378.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n\r\n\r\n\r\n\r\n<tr>\r\n<td style=\"background: white; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">41<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"background: white; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Kolinski M, Dec R, Dzwolak W: <a href=\"https:\/\/www.mdpi.com\/1422-0067\/22\/22\/12325\">Multiscale Modeling of Amyloid Fibrils Formed by Aggregating Peptides Derived from the Amyloidogenic Fragment of the A-Chain of Insulin.<\/a> Int. J. Mol. Sci. 2021, 22(22), 12325 <\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n\r\n\r\n\r\n\r\n<tr>\r\n<td style=\"background: silver; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">40<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"background: silver; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Zalewski M, Kmiecik S, Kolinski M: <a href=\"https:\/\/www.mdpi.com\/1420-3049\/26\/11\/3293\">Molecular Dynamics Scoring of Protein\u2013Peptide Models Derived from Coarse-Grained Docking<\/a> Molecules 2021, 26(11), 3293.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n<tr>\r\n<td style=\"background: white; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">39<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"background: white; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Badaczewska-Dawid A, Kmiecik S, Kolinski M: <a href=\"https:\/\/academic.oup.com\/bib\/advance-article-abstract\/doi\/10.1093\/bib\/bbaa109\/5855394?redirectedFrom=fulltext\">Docking of peptides to GPCRs using a combination of CABS-dock with FlexPepDock refinement.<\/a> Briefings in Bioinformatics 2020, May 20;22(3):bbaa109.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"background: silver; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">38<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"background: silver; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Dec R, Kolinski M, Kouza M, Dzwolak W: <a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0141813020308527\">Rapid self-association of highly amyloidogenic H-fragments of insulin: Experiment and molecular dynamics simulations.<\/a> International Journal of Biological Macromolecules 2020, May 1;150:894-903.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"background: white; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">37<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"background: white; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Koli\u0144ski M, Kmiecik S, Dec R, Piejko M, Mak P, Dzwolak W: <a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0141813019401906\">Docking interactions determine early cleavage events in insulin proteolysis by pepsin: Experiment and simulation.<\/a> International Journal of Biological Macromolecules 2020, Apr 15;149:1151-1160.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"background: silver; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">36<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"background: silver; padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Kurcinski M, Badaczewska\u2010Dawid A, Kolinski M, Kolinski A, Kmiecik S: <a href=\"https:\/\/onlinelibrary.wiley.com\/doi\/full\/10.1002\/pro.3771\">Flexible docking of peptides to proteins using CABS\u2010dock.<\/a> Protein Science 2020, 29(1):211-222.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">35<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"padding: 0cm 5.4pt 0cm 5.4pt; border: none;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Kmiecik S, Wabik J, Kolinski M, Kouza M, Kolinski A: Protein Dynamics Simulations Using Coarse-Grained Models. In: Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes. Springer, Cham; 2019: 61-87.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">34<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Dec R, Koli\u0144ski M, Dzwolak W: Beyond amino acid sequence: disulfide bonds and the origins of the extreme amyloidogenic properties of insulin&#8217;s H\u2010fragment. The FEBS journal 2019, 286(16)3194-3205.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">33<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\" lang=\"PL\">Blaszczyk M, Gront D, Kmiecik S, Kurcinski M, Kolinski M, Ciemny MP, Ziolkowska K, Panek M, Kolinski A: Protein Structure Prediction Using Coarse-Grained Models. <\/span><span style=\"color: black;\">In: Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes. Springer, Cham; 2019: 27-59.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">32<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\" lang=\"PL\">Szulczyk D, Dobrowolski MA, Roszkowski P, Bielenica A, Stefa\u0144ska J, Koli\u0144ski M, Kmiecik S, J\u00f3\u017awiak M, Wrzosek M, Olejarz W: Design and synthesis of novel 1H-tetrazol-5-amine based potent antimicrobial agents: DNA topoisomerase IV and gyrase affinity evaluation supported by molecular docking studies. <\/span><span style=\"color: black;\">European journal of medicinal chemistry 2018, 156:631-640.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">31<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\" lang=\"PL\">Bielenica A, Drzewiecka-Antonik A, Rejmak P, Stefa\u0144ska J, Koli\u0144ski M, Kmiecik S, Lesyng B, W\u0142odarczyk M, Pietrzyk P, Struga M: Synthesis, structural and antimicrobial studies of type II topoisomerase-targeted copper (II) complexes of 1, 3-disubstituted thiourea ligands. <\/span><span style=\"color: black;\">Journal of inorganic biochemistry 2018, 182:61-70.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">30<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Tro\u0107 A, Zimnicka M, Koli\u0144ski M, Danikiewicz W: Structural Elucidation of <\/span><span style=\"color: black;\" lang=\"PL\">\u03b2<\/span><span style=\"color: black;\">\u2010Lactam Diastereoisomers through Ion Mobility Mass Spectrometry Studies and Theoretical Calculations. Journal of Mass Spectrometry 2016, 51(4):282-290.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">29<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Pulawski W, Jamroz M, Kolinski M, Kolinski A, Kmiecik S: Coarse-grained simulations of membrane insertion and folding of small helical proteins using the CABS model. Journal of chemical information and modeling 2016, 56(11):2207-2215.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">28<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Kmiecik S, Gront D, Kolinski M, Wieteska L, Dawid AE, Kolinski A: Coarse-grained protein models and their applications. Chemical reviews 2016, 116(14):7898-7936.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">27<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Bielenica A, K\u0119dzierska E, Koli\u0144ski M, Kmiecik S, Koli\u0144ski A, Fiorino F, Severino B, Magli E, Corvino A, Rossi I: 5-HT2 receptor affinity, docking studies and pharmacological evaluation of a series of 1, 3-disubstituted thiourea derivatives. European journal of medicinal chemistry 2016, 116:173-186.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">26<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Yuan S, Palczewski K, Peng Q, Kolinski M, Vogel H, Filipek S: The Mechanism of Ligand\u2010Induced Activation or Inhibition of <\/span><span style=\"color: black;\" lang=\"PL\">\u03bc<\/span><span style=\"color: black;\">\u2010and <\/span><span style=\"color: black;\" lang=\"PL\">\u03ba<\/span><span style=\"color: black;\">\u2010Opioid Receptors. Angewandte Chemie International Edition 2015, 54(26):7560-7563.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">25<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Horwacik I, Golik P, Grudnik P, Kolinski M, Zdzalik M, Rokita H, Dubin G: Structural basis of GD2 ganglioside and mimetic peptide recognition by 14G2a antibody. Molecular &amp; Cellular Proteomics 2015, 14(10):2577-2590.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">24<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Zimnicka M, Troc\u0301 A, Ceborska M, Jakubczak M, Kolin\u0301ski M, Danikiewicz W: Structural elucidation of specific noncovalent association of folic acid with native cyclodextrins using an ion mobility mass spectrometry and theoretical approach. Analytical chemistry 2014, 86(9):4249-4255.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">23<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Lazarova T, Mlynarczyk K, Filipek S, Kolinski M, Wassenaar TA, Querol E, Renugopalakrishnan V, Viswanathan S, Padr\u00f3s E: The effect of triple glutamic mutations E9Q\/E194Q\/E204Q on the structural stability of bacteriorhodopsin. The FEBS journal 2014, 281(4):1181-1195.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">22<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Kmiecik S, Wabik J, Kolinski M, Kouza M, Kolinski A: Coarse-grained modeling of protein dynamics. In: Computational methods to study the structure and dynamics of biomolecules and biomolecular processes. Springer, Berlin, Heidelberg; 2014: 55-79.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">21<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Kmiecik S, Jamroz M, Kolinski M: Structure Prediction of the Second Extracellular Loop in G-Protein-Coupled Receptors. Biophysical Journal 2014:2408\u20132416.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">20<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Plazinska A, Kolinski M, Wainer IW, Jozwiak K: Molecular interactions between fenoterol stereoisomers and derivatives and the <\/span><span style=\"color: black;\" lang=\"PL\">\u03b2<\/span><span style=\"color: black;\"> 2-adrenergic receptor binding site studied by docking and molecular dynamics simulations. Journal of molecular modeling 2013, 19(11):4919-4930.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">19<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Sosnowski TR, Koli\u0144ski M, Grado\u0144 L: Alteration of surface properties of dipalmitoyl phosphatidylcholine by benzo [a] pyrene: a model of pulmonary effects of diesel exhaust inhalation. Journal of biomedical nanotechnology 2012, 8(5):818-825.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">18<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Kolinski M, Plazinska A, Jozwiak K: Recent progress in understanding of structure, ligand interactions and the mechanism of activation of the <\/span><span style=\"color: black;\" lang=\"PL\">\u03b2<\/span><span style=\"color: black;\"> 2-adrenergic receptor. Current medicinal chemistry 2012, 19(8):1155-1163.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">17<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\" lang=\"PL\">Dawid A, Kolinski M, Koli\u0144ski A, Kmiecik S: Modelowanie Molekularne Bia\u0142ek B\u0142onowych (Molecular Modeling of Membrane Proteins). Na pograniczu chemii i biologii (At the Treshold of Chemistry and Biology) vol XXVIII, H Koroniak, J Barciszewski eds, Wydawnictwo Naukowe UAM, Pozna\u0144 2012.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">16<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Sosnowski TR, Koli\u0144ski M, Grado\u0144 L: Interactions of benzo [a] pyrene and diesel exhaust particulate matter with the lung surfactant system. Annals of occupational hygiene 2011, 55(3):329-338.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">15<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Latek D, Kolinski M, Ghoshdastider U, Debinski A, Bombolewski R, Plazinska A, Jozwiak K, Filipek S: Modeling of ligand binding to G protein coupled receptors: cannabinoid CB 1, CB 2 and adrenergic <\/span><span style=\"color: black;\" lang=\"PL\">\u03b2<\/span><span style=\"color: black;\"> 2 AR. Journal of molecular modeling 2011, 17(9):2353-2366.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">14<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Audette GF, Lombardo S, Dudzik J, Arruda TM, Kolinski M, Filipek S, Mukerjee S, Kannan AM, Thavasi V, Ramakrishna S: Protein hot spots at bio-nano interfaces. <\/span><span style=\"color: black;\" lang=\"PL\">Materials Today 2011, 14(7-8):360-365.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">13<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\" lang=\"PL\">Sosnowski T, Koli\u0144ski M, Grado\u0144 L: Wp\u0142yw benzo [a] pirenu na w\u0142asno\u015bci fosfolipid\u00f3w surfaktantu p\u0142ucnego: modelowa analiza toksyczno\u015bci spalin silnik\u00f3w Diesla. <\/span><span style=\"color: black;\">In\u017cynieria i Aparatura Chemiczna 2010(2):115-116.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">12<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Sobhanifar S, Schneider B, L\u00f6hr F, Gottstein D, Ikeya T, Mlynarczyk K, Pulawski W, Ghoshdastider U, Kolinski M, Filipek S: Structural investigation of the C-terminal catalytic fragment of presenilin 1. Proceedings of the National Academy of Sciences 2010, 107(21):9644-9649.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">11<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Kolinski M, Filipek S: Study of a structurally similar kappa opioid receptor agonist and antagonist pair by molecular dynamics simulations. Journal of molecular modeling 2010, 16(10):1567-1576.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">10<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Thavasi V, Lazarova T, Filipek S, Kolinski M, Querol E, Kumar A, Ramakrishna S, Padr\u00f3s E, Renugopalakrishnan V: Study on the feasibility of bacteriorhodopsin as bio-photosensitizer in excitonic solar cell: a first report. Journal of nanoscience and nanotechnology 2009, 9(3):1679-1687.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">9<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Kolinski M, Filipek S: Studies of the activation steps concurrent to ligand binding in DOR and KOR opioid receptors based on molecular dynamics simulations. TOSBJ 2009, 3:51-63.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">8<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Jaworski JS, Kosson A, Filipek S, Kuck D: Properties of Radical Anions of Triptindanones and Indanones: Electronic Communication and Stability of Ion Pairs Containing Lithium Cations. The Journal of Physical Chemistry C 2009, 113(17):7436-7442.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">7<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Austermann J, Nazmi AR, Heil A, Fritz G, Kolinski M, Filipek S, Gerke V: Generation and characterization of a novel, permanently active S100P mutant. Biochimica et Biophysica Acta (BBA)-Molecular Cell Research 2009, 1793(6):1078-1085.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">6<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Kolinski M, Filipek S: Molecular dynamics of mu opioid receptor complexes with agonists and antagonists. TOSBJ 2008, 2:8-20.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">5<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Bhatia P, Kolinski M, Moaddel R, Jozwiak K, Wainer I: Determination and modelling of stereoselective interactions of ligands with drug transporters: a key dimension in the understanding of drug disposition. Xenobiotica 2008, 38(7-8):656-675.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">4<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Park PS-H, Sapra KT, Koli\u0144ski M, Filipek S, Palczewski K, Muller DJ: Stabilizing effect of Zn2+ in native bovine rhodopsin. Journal of Biological Chemistry 2007, 282(15):11377-11385.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">3<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Krzysko K, Kolinski M, Filipek S: Molecular modelling of the complex of oligomeric rhodopsin and its G protein. Journal of Physics: Condensed Matter 2007, 19(28):285204.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">2<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; background: silver; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Jaworski JS, Cembor M, Koli\u0144ski M: Electrostatic model of bond dissociation energies in polyhalogen methanes. Journal of physical organic chemistry 2006, 19(4):276-280.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"border: none; border-bottom: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><b><span style=\"color: black;\" lang=\"PL\">1<\/span><\/b><\/p>\r\n<\/td>\r\n<td style=\"border: none; border-bottom: none; padding: 0cm 5.4pt 0cm 5.4pt;\" valign=\"top\">\r\n<p class=\"MsoNormal\" style=\"margin-bottom: .0001pt; line-height: normal;\"><span style=\"color: black;\">Filipek S, Kolinski M, Siadkowska E, Kolczewska M: Modeling of opioid receptors and ligand binding. European Journal of Biochemistry Supplement 2004, 271.<\/span><\/p>\r\n<\/td>\r\n<\/tr>\r\n<\/tbody>\r\n<\/table>\r\n<p class=\"MsoNormal\">&nbsp;<\/p>\r\n<\/div>\r\n\r\n\r\n\r\n<p><\/p>\r\n","protected":false},"excerpt":{"rendered":"<p>e-mail address: mkolinski@imdik.pan.pl Phone#: (+48) 22 849 93 58 Bioinformatics Laboratory, Mossakowski Medical Research Institute Polish Academy of Sciences 5 Pawi\u0144skiego Str. 02-106 Warsaw, Poland EDUCATION:&nbsp; 2024: DSc (Habilitation), &#8220;Development of multi-scale molecular modeling methods and their application to study &hellip; <a href=\"https:\/\/bioinfo.imdik.pan.pl\/index.php\/michal-kolinski\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-145","page","type-page","status-publish","hentry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.9 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Micha\u0142 Koli\u0144ski, PhD DSc |<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/bioinfo.imdik.pan.pl\/index.php\/michal-kolinski\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Micha\u0142 Koli\u0144ski, PhD DSc |\" \/>\n<meta property=\"og:description\" content=\"e-mail address: mkolinski@imdik.pan.pl Phone#: (+48) 22 849 93 58 Bioinformatics Laboratory, Mossakowski Medical Research Institute Polish Academy of Sciences 5 Pawi\u0144skiego Str. 02-106 Warsaw, Poland EDUCATION:&nbsp; 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